STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0551PFAM: oxidoreductase domain protein; KEGG: ote:Oter_3509 oxidoreductase domain- containing protein. (448 aa)    
Predicted Functional Partners:
Caka_0547
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.703
Caka_0550
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5864 xylose isomerase domain- containing protein.
  
    0.700
Caka_0428
PFAM: protein of unknown function DUF1080; KEGG: rmr:Rmar_1742 protein of unknown function DUF1080.
  
     0.691
Caka_2927
PFAM: protein of unknown function DUF1080; KEGG: cpi:Cpin_7254 protein of unknown function DUF1080.
  
     0.691
Caka_0959
KEGG: cpi:Cpin_6423 hypothetical protein.
  
     0.615
Caka_2932
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rba:RB9132 hypothetical protein.
  
     0.564
Caka_0088
PFAM: protein of unknown function DUF1080; KEGG: dfe:Dfer_0295 protein of unknown function DUF1080.
  
     0.533
Caka_0552
KEGG: efa:EF1591 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
       0.529
Caka_2935
PFAM: protein of unknown function DUF1080; KEGG: rmr:Rmar_1623 protein of unknown function DUF1080.
  
     0.499
Caka_0972
PFAM: protein of unknown function DUF1080; KEGG: rba:RB7152 secreted glycosyl hydrolase.
  
     0.494
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.