STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI-24-deoxy-L-threo-5-hexosulose-uronateketol-isomer ase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)    
Predicted Functional Partners:
Caka_0226
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2552 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.950
kduI
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
  
 
0.903
Caka_0519
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_4331 short-chain dehydrogenase/reductase SDR.
 
 
  0.902
Caka_2861
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_4291 short-chain dehydrogenase/reductase SDR.
 
 
  0.902
Caka_0817
TRAP dicarboxylate transporter, DctP subunit; KEGG: ttu:TERTU_0891 TRAP transporter solute receptor, DctP family; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria.
       0.778
Caka_0818
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sde:Sde_1267 aspartate kinase, monofunctional class.
       0.724
Caka_0819
KEGG: sde:Sde_0934 ribosomal protein L16; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
       0.724
Caka_0898
PFAM: glycosyl hydrolase family 88; KEGG: bth:BT_2963 hypothetical protein.
 
   
 0.657
Caka_0814
KEGG: mta:Moth_0375 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
       0.641
Caka_0815
PFAM: Dimethylmenaquinone methyltransferase; KEGG: ect:ECIAI39_0669 putative demethylmenaquinone methyltransferase.
       0.636
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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