STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1213TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: ote:Oter_4168 FeS assembly ATPase SufC; SMART: AAA ATPase. (253 aa)    
Predicted Functional Partners:
Caka_1214
KEGG: ote:Oter_4169 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
 
 0.999
Caka_1112
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.997
Caka_1215
KEGG: ote:Oter_4170 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.
 
 0.995
Caka_1111
KEGG: gvi:glr1374 hypothetical protein; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
 
  
 0.917
Caka_1216
KEGG: ote:Oter_4171 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59.
 
  
 0.838
Caka_0669
PFAM: protein of unknown function DUF59; KEGG: ote:Oter_3876 hypothetical protein.
 
  
 0.693
Caka_2501
PFAM: Fe-S metabolism associated SufE; KEGG: rmr:Rmar_2026 Fe-S metabolism associated SufE.
 
   0.691
Caka_1212
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ote:Oter_4167 ferric uptake regulator family protein; Belongs to the Fur family.
     
 0.575
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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