STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1253Beta-agarase; PFAM: Carbohydrate binding family 6; KEGG: pat:Patl_0839 Ig-like, group 2; SMART: cellulose binding type IV. (1303 aa)    
Predicted Functional Partners:
Caka_0054
Beta-agarase; KEGG: sde:Sde_1175 agarase; PFAM: glycoside hydrolase family 16.
  
     0.773
Caka_0372
KEGG: sde:Sde_2657 hypothetical protein.
  
     0.772
Caka_0433
PFAM: glycoside hydrolase family 16; KEGG: pat:Patl_0805 glycoside hydrolase family protein.
  
     0.771
Caka_0490
PFAM: glycoside hydrolase family 16; KEGG: gfo:GFO_1725 glycosy hydrolase family protein.
  
     0.771
Caka_0640
KEGG: sde:Sde_0112 hypothetical protein.
  
     0.770
Caka_0895
PFAM: Ig family protein; KEGG: gfo:GFO_1725 glycosy hydrolase family protein.
  
     0.769
Caka_0495
KEGG: sfu:Sfum_3494 hypothetical protein.
  
     0.766
Caka_0071
PFAM: glycoside hydrolase family 16; KEGG: gfo:GFO_1714 glycosyl hydrolase.
  
     0.759
Caka_0422
PFAM: sulfatase; KEGG: cps:CPS_2381 sulfatase family protein.
  
     0.758
Caka_0442
KEGG: rba:RB2702 kappa-carrageenase [precursor]; PFAM: glycoside hydrolase family 16.
  
     0.756
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.