STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1254Hypothetical protein; KEGG: cpi:Cpin_4356 glucan endo-1,6-beta- glucosidase. (550 aa)    
Predicted Functional Partners:
Caka_1255
Hypothetical protein; KEGG: btl:BALH_4611 ABC transporter, ATP-binding protein.
       0.545
Caka_2844
PFAM: ADP-ribosylation/Crystallin J1; KEGG: abm:ABSDF0852 putative ADP- ribosylglycohydrolase.
  
     0.451
Caka_0490
PFAM: glycoside hydrolase family 16; KEGG: gfo:GFO_1725 glycosy hydrolase family protein.
  
     0.435
Caka_2221
KEGG: cpi:Cpin_3704 PA14 domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
     0.415
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.