STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1930KEGG: gfo:GFO_0789 phosphodiesterase/alkaline phosphatase D-like protein. (334 aa)    
Predicted Functional Partners:
Caka_2642
KEGG: cts:Ctha_2249 phosphodiesterase I.
  
  
  0.973
Caka_0432
PFAM: Alkaline phosphatase D-related; KEGG: rba:RB88 alkaline phosphatase D.
  
  
 
0.928
Caka_0924
PFAM: Alkaline phosphatase; KEGG: sru:SRU_2450 alkaline phosphatase, putative; SMART: Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.928
Caka_2396
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.907
Caka_1798
KEGG: syr:SynRCC307_1620 6-pyruvoyl tetrahydropterin synthase.
     
  0.900
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.900
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.549
Caka_0930
Hypothetical protein; KEGG: rba:RB1390 signal peptide.
  
     0.469
Caka_0125
KEGG: sru:SRU_1374 hypothetical protein.
  
     0.434
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.