STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2986PFAM: Ion transport 2 domain protein; KEGG: mar:MAE_02310 putative ion transport protein. (239 aa)    
Predicted Functional Partners:
Caka_2985
PFAM: WD40 domain protein beta Propeller; KEGG: ote:Oter_4587 periplasmic component of the Tol biopolymer transport system-like protein.
       0.732
Caka_1700
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vfm:VFMJ11_2484 hypothetical protein.
  
     0.587
Caka_0721
KEGG: swp:swp_4034 hypothetical protein.
  
     0.579
Caka_1701
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vfm:VFMJ11_2484 hypothetical protein.
  
     0.573
Caka_2310
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pvi:Cvib_0572 cupin 2 domain-containing protein.
 
     0.570
Caka_1699
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: mlo:mll5470 hypothetical protein.
  
     0.542
Caka_2173
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
  
     0.466
Caka_2984
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.465
Caka_1242
PFAM: MEKHLA domain protein; KEGG: rlt:Rleg2_1410 MEKHLA domain protein.
  
     0.428
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.