STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0697Site-specific DNA-methyltransferase (adenine-specific); COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR003356:IPR002052; KEGG: dde:Dde_3427 type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS6 Type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM). (507 aa)    
Predicted Functional Partners:
Apau_0699
Restriction modification system DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055:IPR013838; KEGG: rpi:Rpic_3173 restriction modification system, type I; PFAM: restriction modification system DNA specificity domain; SPTR: B2UDQ4 Restriction modification system, type I; PFAM: Type I restriction modification DNA specificity domain.
 
 0.996
Apau_0700
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.983
Apau_2265
Restriction modification system DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: xfa:XF2726 type I restriction-modification system specificity determinant; PFAM: restriction modification system DNA specificity domain; SPTR: Q9P9Z4 Type I restriction-modification system specificity determinant; PFAM: Type I restriction modification DNA specificity domain.
 
 
 0.965
Apau_2264
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.890
Apau_2035
ADP-ribosylation/Crystallin J1; COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: ppd:Ppro_1586 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: A1APD1 ADP-ribosylation/Crystallin J1; PFAM: ADP-ribosylglycohydrolase.
      0.712
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.590
Apau_1077
InterPro IPR005186; KEGG: tai:Taci_0671 hypothetical protein; PFAM: flagellar protein FlaG protein; SPTR: D1B9F4 Putative uncharacterized protein; PFAM: FlaG protein.
    
   0.511
Apau_1079
InterPro IPR005186; KEGG: tai:Taci_0671 hypothetical protein; PFAM: flagellar protein FlaG protein; SPTR: D1B9F4 Putative uncharacterized protein; PFAM: FlaG protein.
    
   0.511
Apau_1087
AAA ATPase; COGs: COG3950 ATP-binding protein involved in virulence; InterPro IPR003593; KEGG: cyp:PCC8801_0472 AAA ATPase; SMART: AAA ATPase; SPTR: C6MQ57 AAA ATPase.
  
  
 0.484
Apau_0695
COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR002296:IPR003356:IPR002052; KEGG: dde:Dde_3429 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS4 Type I restriction-modification system, M subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
    
0.459
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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