STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0729Hypothetical protein; SPTR: C1TKY9 Putative uncharacterized protein. (54 aa)    
Predicted Functional Partners:
Apau_0725
Transcriptional regulator, TetR family; InterPro IPR001647:IPR009057:IPR011075:IPR012287; KEGG: oih:OB3169 hypothetical protein; PFAM: regulatory protein TetR; SPTR: Q8ELQ0 Putative uncharacterized protein OB3169; PFAM: Bacterial regulatory proteins, tetR family.
       0.444
Apau_0726
Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: drm:Dred_3060 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: C9KPQ6 Secretion protein, HlyD family; PFAM: HlyD family secretion protein.
       0.444
Apau_0727
ABC-2 type transporter; InterPro IPR013525; KEGG: adg:Adeg_0992 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: C9KPQ7 ABC-2 type transporter family protein; PFAM: ABC-2 type transporter.
       0.444
Apau_0728
ABC-2 type transporter; InterPro IPR013525; KEGG: adg:Adeg_0992 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: C9KPQ8 ABC-2 type transporter family protein; PFAM: ABC-2 type transporter.
       0.444
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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