STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cybCSoluble cytochrome b562; Electron-transport protein of unknown function. (128 aa)    
Predicted Functional Partners:
crl
DNA-binding transcriptional regulator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.735
ybaJ
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; 7984428, 14645275.
  
   
 0.733
CAQ97242.1
Putative flagellin structural protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.721
cpxP
Periplasmic protein combats stress; Function experimentally demonstrated in the studied species; regulator.
  
     0.720
ycfR
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.705
yiaF
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.696
yciC
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.
  
     0.687
kpdD
Conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase; Function experimentally demonstrated in the studied species; enzyme.
  
     0.681
yajG
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.675
ypfN
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.672
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.