STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG48608.1CobW/P47K family protein; COG: COG0523; Pfam: PF02492; InterPro: IPR003495. (344 aa)    
Predicted Functional Partners:
EFG48609.1
Amidohydrolase family protein; COG: COG1574; Pfam: PF07969; InterPro: IPR013108.
       0.774
EFG48606.1
Transporter, SSS family; COG: COG0591; Pfam: PF00474; InterPro: IPR001734; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.773
EFG48607.1
Hypothetical protein.
       0.773
EFG47631.1
CobW/P47K C-terminal domain protein; COG: COG0523; Pfam: PF07683.
     0.709
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.615
map-2
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.615
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.568
EFG47555.1
ABC transporter, substrate-binding protein; Pfam: PF01297; InterPro: IPR006127; Belongs to the bacterial solute-binding protein 9 family.
 
    0.450
ilvD
Dihydroxy-acid dehydratase; COG: COG0129; Pfam: PF00920; InterPro: IPR000581; Belongs to the IlvD/Edd family.
       0.445
sitA
ABC transporter, substrate-binding protein; COG: COG0803; Pfam: PF01297; InterPro: IPR006127; Belongs to the bacterial solute-binding protein 9 family.
 
    0.436
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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