STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG48624.1Penicillin-binding protein, transpeptidase domain protein; Pfam: PF03717,PF00905. (541 aa)    
Predicted Functional Partners:
EFG48059.1
Transglycosylase; COG: COG0744; Pfam: PF00912,PF00905; InterPro: IPR001460.
  
 
 0.920
ponA
Transglycosylase; COG: COG0744; Pfam: PF00912,PF00905; InterPro: IPR001460.
  
 
 0.849
EFG48197.1
Hypothetical protein.
  
 
 0.822
ftsW
Cell division protein FtsW; COG: COG0772; Pfam: PF01098; InterPro: IPR001182; Belongs to the SEDS family.
 
 
 0.748
ftsW-2
Cell cycle protein, FtsW/RodA/SpoVE family; COG: COG0772; Pfam: PF01098; InterPro: IPR001182; Belongs to the SEDS family.
  
 
 0.713
EFG48622.1
Hydrolase, TatD family; Pfam: PF01026; InterPro: IPR001130.
       0.588
EFG46638.1
Serine-type D-Ala-D-Ala carboxypeptidase; COG: COG1686; Pfam: PF00768; InterPro: IPR001967; Belongs to the peptidase S11 family.
  
 
 0.584
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.548
hypB
ThiF family protein; COG: COG1179; Pfam: PF00899; InterPro: IPR016040.
       0.542
EFG48178.1
LysM domain protein; Pfam: PF01476,PF01464; InterPro: IPR008258.
 
 
 0.541
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.