STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG48382.1Hypothetical protein; Pfam: PF07287; InterPro: IPR010839; 3.6.1.11. (592 aa)    
Predicted Functional Partners:
pccB2
Carboxyl transferase domain protein; COG: COG4799; Pfam: PF01039; InterPro: IPR000022.
 
 
 0.917
EFG48556.1
Carbamoyl-phosphate synthase L chain, ATP binding domain protein; COG: COG4799; Pfam: PF00289,PF02786,PF02785,PF01039; InterPro: IPR013816.
 
 
 0.910
accA
Carbamoyl-phosphate synthase L chain, ATP binding domain protein; COG: COG4770; Pfam: PF00289,PF02786,PF02785,PF00364; InterPro: IPR013816.
 
 
 0.879
EFG48385.1
enoyl-CoA hydratase/isomerase family protein; COG: COG1024; Pfam: PF00378; InterPro: IPR001753.
 
 
  0.813
EFG46808.1
TIGR03084 family protein.
 
     0.727
EFG48386.1
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR001647.
 
     0.724
pccB
Carboxyl transferase domain protein; COG: COG4799; Pfam: PF01039; InterPro: IPR000022.
 
 
 0.618
menE3
AMP-binding enzyme; COG: COG0318; Pfam: PF00501; InterPro: IPR000873.
    
  0.572
pccB3
Carboxyl transferase domain protein; COG: COG4799; Pfam: PF01039; InterPro: IPR000022.
  
 
 0.569
ivd
acyl-CoA dehydrogenase, C-terminal domain protein; COG: COG1960; Pfam: PF02771,PF02770,PF00441; InterPro: IPR006090.
  
    0.564
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.