STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG48307.1Hypothetical protein; COG: COG1937; Pfam: PF02583; InterPro: IPR003735. (116 aa)    
Predicted Functional Partners:
copB2
Heavy metal translocating P-type ATPase; COG: COG2217; Pfam: PF00122,PF00702; InterPro: IPR001757.
  
  
 0.803
EFG48513.1
Mycothiol-dependent formaldehyde dehydrogenase; COG: COG1062; Pfam: PF08240,PF00107; InterPro: IPR002085.
  
    0.501
adh5
GroES-like protein; COG: COG1062; Pfam: PF08240,PF00107; InterPro: IPR002085.
  
    0.501
EFG48305.1
Hypothetical protein.
       0.452
EFG48306.1
Hypothetical protein.
       0.452
EFG47288.1
Heavy metal-associated domain protein; Pfam: PF00403; InterPro: IPR006121.
 
  
 0.448
pheT
phenylalanine--tRNA ligase, beta subunit; COG: COG0072; Pfam: PF01588,PF03483,PF03484,PF03147; InterPro: IPR004532; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
      
 0.410
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.