STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG48179.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
EFG48177.1
Kinase domain protein; COG: COG0515; Pfam: PF00069,PF03793; InterPro: IPR002290.
     
 0.682
EFG48202.1
DivIVA domain protein; Pfam: PF05103.
  
     0.648
EFG47376.1
Hypothetical protein.
  
     0.612
EFG48178.1
LysM domain protein; Pfam: PF01476,PF01464; InterPro: IPR008258.
       0.611
sirR
Iron dependent repressor DNA binding domain protein; COG: COG1321; Pfam: PF01325,PF02742,PF04023; InterPro: IPR001367.
   
    0.592
holA
DNA polymerase III, delta subunit; COG: COG1466; Pfam: PF06144; InterPro: IPR005790.
  
     0.555
EFG47123.1
RDD family protein; Pfam: PF06271; InterPro: IPR010432.
  
     0.536
npdA
Transcriptional regulator, Sir2 family; COG: COG0846; Pfam: PF02146; InterPro: IPR003000.
   
    0.521
EFG48182.1
Hypothetical protein.
  
     0.514
EFG47114.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.