STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydBCytochrome d ubiquinol oxidase, subunit II; COG: COG1294; Pfam: PF02322; InterPro: IPR003317. (344 aa)    
Predicted Functional Partners:
cydA
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 0.999
cydC
Thiol reductant ABC exporter, CydC subunit; COG: COG4987; Pfam: PF00005; InterPro: IPR014223.
 
  
 0.998
sdhA
Succinate dehydrogenase, flavoprotein subunit; Ubiquinone; COG: COG1053; Pfam: PF00890,PF02910; InterPro: IPR011281; overlaps another CDS with the same product name.
     
 0.718
sdhC
Succinate dehydrogenase, cytochrome b556 subunit; COG: COG2009; Pfam: PF01127; InterPro: IPR014314.
     
 0.669
sdhB
Succinate dehydrogenase iron-sulfur subunit; COG: COG0479; Pfam: PF00111; InterPro: IPR004489; overlaps another CDS with the same product name.
     
 0.646
EFG46635.1
Hypothetical protein; COG: COG2142.
     
 0.499
atpC
ATP synthase, delta/epsilon subunit, beta-sandwich domain protein; Pfam: PF02823; InterPro: IPR001469.
      
 0.491
EFG46357.1
Pyridine nucleotide-disulfide oxidoreductase; COG: COG1252; Pfam: PF07992,PF00070; InterPro: IPR013027.
 
   
 0.473
gyrB2
DNA gyrase, B subunit, C-terminal domain protein; COG: COG0187; Pfam: PF02518,PF00204,PF01751,PF00986; InterPro: IPR001241.
       0.457
EFG47107.1
Cytochrome b/b6 family protein; COG: COG1290; Pfam: PF00033; InterPro: IPR016175.
      
 0.446
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.