STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroDPutative 3-dehydroquinate dehydratase, type I; COG: COG0710; Pfam: PF01487; InterPro: IPR013785. (287 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
 
 0.961
aroE
Putative shikimate dehydrogenase; COG: COG0169; Pfam: PF08501; InterPro: IPR016040.
 
  
 0.960
menF
Isochorismate synthase; COG: COG1169; Pfam: PF00425; InterPro: IPR005801.
  
  
 0.888
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
  
 0.622
EFG48167.1
Hypothetical protein; Pfam: PF04314; InterPro: IPR007410.
       0.610
EFG48168.1
Putative Tat-translocated enzyme; COG: COG2837; Pfam: PF04261; InterPro: IPR006314.
       0.610
trpE
Anthranilate synthase component I; COG: COG0147; Pfam: PF04715,PF00425; InterPro: IPR005801.
 
  
 0.532
EFG47500.1
AP endonuclease, family 2; COG: COG1082; Pfam: PF01261; InterPro: IPR013022.
    
 0.445
EFG48166.1
Hypothetical protein.
       0.440
EFG48020.1
Chorismate mutase; COG: COG1605; Pfam: PF01817; InterPro: IPR010951.
    
 0.425
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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