STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaTTransporter, major facilitator family protein; COG: COG0477; Pfam: PF00083; InterPro: IPR005828. (461 aa)    
Predicted Functional Partners:
EFG47753.1
Hypothetical protein; Pfam: PF00083; overlaps another CDS with the same product name.
 
     0.772
EFG48133.1
Hypothetical protein; COG: COG0477.
 
     0.655
glnP
ABC transporter, permease protein; COG: COG0834; Pfam: PF00497,PF00528; InterPro: IPR001638.
  
    0.571
pstB-2
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
  
    0.546
EFG47957.1
Hypothetical protein.
       0.532
yerD
Glutamate synthase domain protein; COG: COG0069; Pfam: PF01645; InterPro: IPR013785; Belongs to the glutamate synthase family.
       0.470
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.