STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47980.1CsbD-like protein; Pfam: PF05532; InterPro: IPR008462; Belongs to the UPF0337 (CsbD) family. (79 aa)    
Predicted Functional Partners:
EFG46884.1
Hypothetical protein; InterPro: IPR016181.
   
    0.571
EFG46725.1
Hypothetical protein; InterPro: IPR016040.
   
    0.543
EFG47981.1
Hypothetical protein.
       0.542
rfbB
ABC transporter, ATP-binding protein; COG: COG1134; Pfam: PF00005; InterPro: IPR003593.
  
    0.451
EFG47405.1
ABC-2 type transporter; Pfam: PF01061.
  
    0.444
osmC
Peroxiredoxin, OsmC subfamily; COG: COG1764; Pfam: PF02566; InterPro: IPR015946.
   
  
 0.434
EFG47979.1
Fic family protein; COG: COG3177; Pfam: PF02661; InterPro: IPR003812.
       0.418
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.