STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pnbACarboxylesterase; COG: COG2272; Pfam: PF00135; InterPro: IPR002018; Belongs to the type-B carboxylesterase/lipase family. (523 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
  0.802
EFG46345.1
LPXTG-motif cell wall anchor domain protein; COG: COG2234; Pfam: PF02225,PF04389,PF00746; InterPro: IPR007484.
  
 0.792
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.789
EFG48234.1
3'-5' exonuclease; COG: COG0349; Pfam: PF01612,PF00570; InterPro: IPR002562.
    
  0.775
EFG47886.1
Hypothetical protein; Pfam: PF09335.
       0.773
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.768
hrpA
ATP-dependent helicase HrpA; COG: COG1643; Pfam: PF00271,PF04408,PF07717; InterPro: IPR010222.
    
  0.643
EFG46983.1
Putative ATP-dependent helicase HrpB; COG: COG1643; Pfam: PF00271,PF04408,PF08482; InterPro: IPR014001.
    
  0.643
deaD
DEAD/DEAH box helicase; COG: COG0513; Pfam: PF00270,PF00271; InterPro: IPR014001; Belongs to the DEAD box helicase family.
   
 0.619
deaD2
DEAD/DEAH box helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
 0.619
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.