STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtYeLycopene cyclase domain protein. (103 aa)    
Predicted Functional Partners:
lctB
Lycopene cyclase domain protein.
 
  
 0.991
ubiA
Dimethylallyltranstransferase; COG: COG0382; Pfam: PF01040.
 
  
 0.987
crtB
Phytoene/squalene synthetase; COG: COG1562; Pfam: PF00494; InterPro: IPR002060.
 
   
 0.972
crtI
Phytoene desaturase; COG: COG1233; Pfam: PF01593; InterPro: IPR014105.
 
   
 0.969
ansB
Tat pathway signal sequence domain protein; COG: COG0252; Pfam: PF00710; InterPro: IPR006034.
       0.773
EFG48180.1
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949; Belongs to the FPP/GGPP synthase family.
     
 0.575
EFG47899.1
Hypothetical protein.
       0.558
EFG47547.1
Hypothetical protein; COG: COG0655.
   
    0.541
otsB
Trehalose-phosphatase; COG: COG0380; Pfam: PF00982,PF02358; InterPro: IPR001830.
   
    0.535
aadAT
Aminotransferase, class I/II; COG: COG1167; Pfam: PF00155; InterPro: IPR004839.
       0.523
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.