STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47939.1IclR helix-turn-helix domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR014757. (255 aa)    
Predicted Functional Partners:
hutF
Formimidoylglutamate deiminase; COG: COG0402; Pfam: PF01979; InterPro: IPR010252.
       0.778
amaB
Allantoate amidohydrolase; COG: COG0624; Pfam: PF01546; InterPro: IPR010158.
       0.778
hutH
Histidine ammonia-lyase; COG: COG2986; Pfam: PF00221; InterPro: IPR005921.
    
  0.641
hutI
Imidazolonepropionase; COG: COG1228; Pfam: PF01979; InterPro: IPR005920.
    
  0.561
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.484
EFG46576.1
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.447
mmsB
3-hydroxyisobutyrate dehydrogenase; COG: COG2084; Pfam: PF03446; InterPro: IPR011548.
  
  
  0.425
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.