STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47819.1Hypothetical protein. (628 aa)    
Predicted Functional Partners:
EFG47820.1
Hypothetical protein.
 
     0.946
EFG47821.1
Hypothetical protein.
       0.773
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
  
 
  0.714
EFG47823.1
ABC transporter, ATP-binding protein; Pfam: PF00664,PF00005; InterPro: IPR001140.
 
    0.632
EFG47049.1
Hypothetical protein.
   
 
 0.580
EFG47840.1
FtsK/SpoIIIE family protein; COG: COG1674; Pfam: PF01580; InterPro: IPR002543.
   
 
 0.537
EFG46830.1
Hypothetical protein.
  
 
   0.515
EFG46527.1
Protein phosphatase 2C; COG: COG0631; Pfam: PF00481; InterPro: IPR001932.
  
  0.511
garA
FHA domain protein; COG: COG1716; Pfam: PF00498; InterPro: IPR000253.
    
   0.509
EFG46528.1
FHA domain protein; COG: COG1716; Pfam: PF00498; InterPro: IPR000253; overlaps another CDS with the same product name.
    
   0.509
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.