STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47714.1Putative ABC transporter; COG: COG0842; Pfam: PF01061. (255 aa)    
Predicted Functional Partners:
EFG47713.1
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
 
 
  0.911
EFG47715.1
Cytochrome oxidase assembly protein; COG: COG1612; Pfam: PF02628.
 
     0.858
lmrA
ABC transporter, ATP-binding protein; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR001140.
       0.762
pimB
ABC transporter transmembrane region; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR001140.
       0.762
EFG47261.1
Hypothetical protein.
  
     0.689
EFG47712.1
HTH domain protein; COG: COG2345; Pfam: PF01047.
 
     0.662
sufB
FeS assembly protein SufB; COG: COG0719; Pfam: PF01458; InterPro: IPR010231.
       0.612
EFG47108.1
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.592
bphF
Rieske [2Fe-2S] domain protein; Pfam: PF00355; InterPro: IPR005806.
       0.576
sufD
FeS assembly protein SufD; COG: COG0719; Pfam: PF01458; InterPro: IPR011542.
       0.576
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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