Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplF | rplR | HMPREF0183_0057 | HMPREF0183_0056 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplF | rpmB | HMPREF0183_0057 | HMPREF0183_0616 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L28; COG: COG0227; Pfam: PF00830; InterPro: IPR001383; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
| rplF | rpmD | HMPREF0183_0057 | HMPREF0183_0054 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L30; COG: COG1841; Pfam: PF00327; InterPro: IPR005996. | 0.999 |
| rplF | rpmE | HMPREF0183_0057 | HMPREF0183_1430 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L31; COG: COG0254; Pfam: PF01197; InterPro: IPR002150. | 0.999 |
| rplF | rpmF | HMPREF0183_0057 | HMPREF0183_1712 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L32; Pfam: PF01783. | 0.999 |
| rplF | rpmG | HMPREF0183_0057 | HMPREF0183_0617 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L33; COG: COG0267; Pfam: PF00471; InterPro: IPR001705; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
| rplF | rpmJ | HMPREF0183_0057 | HMPREF0183_1129 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L36; Pfam: PF00444; InterPro: IPR000473; Belongs to the bacterial ribosomal protein bL36 family. | 0.962 |
| rplF | rpsE | HMPREF0183_0057 | HMPREF0183_0055 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rplF | rpsH | HMPREF0183_0057 | HMPREF0183_0058 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| rplF | rpsN | HMPREF0183_0057 | HMPREF0183_0618 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
| rplR | rplF | HMPREF0183_0056 | HMPREF0183_0057 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
| rplR | rpmB | HMPREF0183_0056 | HMPREF0183_0616 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L28; COG: COG0227; Pfam: PF00830; InterPro: IPR001383; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
| rplR | rpmD | HMPREF0183_0056 | HMPREF0183_0054 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L30; COG: COG1841; Pfam: PF00327; InterPro: IPR005996. | 0.999 |
| rplR | rpmE | HMPREF0183_0056 | HMPREF0183_1430 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L31; COG: COG0254; Pfam: PF01197; InterPro: IPR002150. | 0.999 |
| rplR | rpmF | HMPREF0183_0056 | HMPREF0183_1712 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L32; Pfam: PF01783. | 0.999 |
| rplR | rpmG | HMPREF0183_0056 | HMPREF0183_0617 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L33; COG: COG0267; Pfam: PF00471; InterPro: IPR001705; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
| rplR | rpmJ | HMPREF0183_0056 | HMPREF0183_1129 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L36; Pfam: PF00444; InterPro: IPR000473; Belongs to the bacterial ribosomal protein bL36 family. | 0.962 |
| rplR | rpsE | HMPREF0183_0056 | HMPREF0183_0055 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rplR | rpsH | HMPREF0183_0056 | HMPREF0183_0058 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| rplR | rpsN | HMPREF0183_0056 | HMPREF0183_0618 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
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