STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47631.1CobW/P47K C-terminal domain protein; COG: COG0523; Pfam: PF07683. (332 aa)    
Predicted Functional Partners:
EFG48608.1
CobW/P47K family protein; COG: COG0523; Pfam: PF02492; InterPro: IPR003495.
     0.709
cobW
CobW/P47K family protein; COG: COG0523; Pfam: PF02492,PF07683; InterPro: IPR003495.
 
     0.649
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.615
map-2
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.615
rpmJ
Ribosomal protein L36; Pfam: PF00444; InterPro: IPR000473; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.586
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.572
EFG47632.1
Hypothetical protein.
       0.548
rpmG
Ribosomal protein L33; COG: COG0267; Pfam: PF00471; InterPro: IPR001705; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.486
EFG47555.1
ABC transporter, substrate-binding protein; Pfam: PF01297; InterPro: IPR006127; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.477
EFG47556.1
ABC transporter, ATP-binding protein; COG: COG1121; Pfam: PF00005; InterPro: IPR003593.
     
 0.433
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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