STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47633.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
EFG47583.1
Tetratricopeptide repeat protein; Pfam: PF07719.
  
     0.774
EFG46903.1
ATPase, AFG1 family; COG: COG1485; Pfam: PF03969; InterPro: IPR005654.
  
     0.774
EFG46968.1
Hypothetical protein.
  
     0.774
EFG46635.1
Hypothetical protein; COG: COG2142.
  
     0.774
sdhC
Succinate dehydrogenase, cytochrome b556 subunit; COG: COG2009; Pfam: PF01127; InterPro: IPR014314.
  
     0.773
EFG47083.1
Hypothetical protein.
  
     0.761
sdhB
Succinate dehydrogenase iron-sulfur subunit; COG: COG0479; Pfam: PF00111; InterPro: IPR004489; overlaps another CDS with the same product name.
  
     0.658
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.631
sdhA
Succinate dehydrogenase, flavoprotein subunit; Ubiquinone; COG: COG1053; Pfam: PF00890,PF02910; InterPro: IPR011281; overlaps another CDS with the same product name.
  
     0.612
rpmI
Ribosomal protein L35; Pfam: PF01632; InterPro: IPR001706; Belongs to the bacterial ribosomal protein bL35 family.
       0.537
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.