STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaFHelicase/secretion neighborhood ATPase; COG: COG4962; Pfam: PF00437; InterPro: IPR001482. (379 aa)    
Predicted Functional Partners:
EFG47421.1
CpaE-like protein.
  
    0.874
EFG47363.1
Bacterial type II secretion system domain protein F; COG: COG4965; Pfam: PF00482; InterPro: IPR001992.
 
    0.850
EFG47364.1
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
  
    0.840
EFG47423.1
Bacterial type II secretion system domain protein F; Pfam: PF00482.
  
  
 0.808
EFG47424.1
Bacterial type II secretion system domain protein F; Pfam: PF00482.
  
  
 0.808
EFG47845.1
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992; overlaps another CDS with the same product name.
 
    0.794
EFG47360.1
TadE-like protein; Pfam: PF07811.
 
  
 0.680
EFG47425.1
Hypothetical protein.
     
 0.644
cpaB
Flp pilus assembly protein CpaB; Pfam: PF08666.
 
  
 0.557
EFG47354.1
Putative ACR, COG1430; Pfam: PF02643.
 
     0.474
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.