STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47506.1Hypothetical protein; Pfam: PF08213. (32 aa)    
Predicted Functional Partners:
EFG47507.1
Glutaredoxin-like protein; Pfam: PF05768; InterPro: IPR008554.
       0.588
acuC
Histone deacetylase family; COG: COG0123; Pfam: PF00850; InterPro: IPR000286.
       0.500
hemC
Hydroxymethylbilane synthase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA); Belongs to the HMBS family.
       0.427
hemD
uroporphyrinogen-III synthase; COG: COG1587; Pfam: PF00590,PF02602; InterPro: IPR003754; Belongs to the precorrin methyltransferase family.
       0.427
hemB
Porphobilinogen synthase; COG: COG0113; Pfam: PF00490; InterPro: IPR013785; Belongs to the ALAD family.
       0.427
EFG47511.1
Transcriptional regulator, MarR family; Pfam: PF01047; InterPro: IPR011991.
       0.427
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; COG: COG0001; Pfam: PF00202; InterPro: IPR004639.
       0.401
EFG47513.1
Phosphoglycerate mutase family protein; COG: COG0406; Pfam: PF00300; InterPro: IPR013078.
       0.401
EFG47514.1
Tat pathway signal sequence domain protein; Pfam: PF08534; InterPro: IPR012335.
       0.401
ccdA2
Cytochrome C biogenesis protein transmembrane region; COG: COG0785; Pfam: PF02683; InterPro: IPR003834.
       0.401
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.