STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47303.1ABC transporter, ATP-binding protein; COG: COG4152; Pfam: PF00005; InterPro: IPR003439. (294 aa)    
Predicted Functional Partners:
EFG47302.1
Hypothetical protein.
 
  
 0.940
EFG47301.1
RNA methyltransferase, TrmH family; COG: COG0566; Pfam: PF00588; InterPro: IPR001537.
       0.797
lolD
ABC transporter, ATP-binding protein; COG: COG1136; Pfam: PF00005; InterPro: IPR003439.
  
     0.648
EFG47823.1
ABC transporter, ATP-binding protein; Pfam: PF00664,PF00005; InterPro: IPR001140.
  
     0.574
EFG47300.1
Hypothetical protein.
       0.459
vex
ABC transporter, ATP-binding protein; COG: COG1136; Pfam: PF00005; InterPro: IPR003593.
  
     0.450
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.444
cysS
cysteine--tRNA ligase; COG: COG0215; Pfam: PF01406,PF09190; InterPro: IPR002308; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.438
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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