STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cofEF420-0:Gamma-glutamyl ligase. (346 aa)    
Predicted Functional Partners:
EFG47250.1
Hypothetical protein.
       0.773
scoB
3-oxoacid CoA-transferase, B subunit; COG: COG2057; Pfam: PF01144; InterPro: IPR004165; overlaps another CDS with the same product name.
       0.710
scoA
3-oxoacid CoA-transferase, A subunit; COG: COG1788; Pfam: PF01144; InterPro: IPR004165; overlaps another CDS with the same product name.
       0.709
EFG47727.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
 
 0.618
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
    
  0.587
EFG47326.1
Distant family protein of PhoU.
  
     0.539
EFG48055.1
Hypothetical protein.
  
     0.537
EFG46400.1
CAAX amino terminal protease family protein; Pfam: PF02517.
  
     0.488
EFG47318.1
Hypothetical protein.
  
     0.471
whiB-2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.467
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.