STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47123.1RDD family protein; Pfam: PF06271; InterPro: IPR010432. (149 aa)    
Predicted Functional Partners:
EFG47108.1
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.735
glnA
Glutamine synthetase, type I; COG: COG0174; Pfam: PF03951,PF00120; InterPro: IPR004809; Belongs to the glutamine synthetase family.
  
   0.684
qcrC
COG: COG2010; Pfam: PF00034.
  
     0.655
EFG47773.1
Membrane protein.
  
     0.629
EFG48105.1
cytoChrome c oxidase Caa3 assembly factor; COG: COG3336; Pfam: PF05425.
  
     0.592
petA
Rieske [2Fe-2S] domain protein; COG: COG0723; Pfam: PF00355; InterPro: IPR005806.
  
     0.547
EFG48179.1
Hypothetical protein.
  
     0.536
EFG47755.1
ResB-like protein; COG: COG1333; Pfam: PF05140; InterPro: IPR007816.
  
     0.524
EFG47107.1
Cytochrome b/b6 family protein; COG: COG1290; Pfam: PF00033; InterPro: IPR016175.
  
     0.507
EFG47714.1
Putative ABC transporter; COG: COG0842; Pfam: PF01061.
  
     0.466
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.