STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46994.1Transcriptional regulator, IclR family, C-terminal domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR014757. (247 aa)    
Predicted Functional Partners:
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.744
EFG47150.1
Hypothetical protein.
  
     0.693
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
    0.669
EFG48035.1
Hypothetical protein.
  
     0.581
EFG47261.1
Hypothetical protein.
  
     0.524
EFG46715.1
Acetyltransferase, GNAT family; Pfam: PF00583.
  
     0.463
EFG46993.1
Hypothetical protein.
       0.461
EFG46921.1
Hypothetical protein; Pfam: PF03993; InterPro: IPR007139.
  
     0.436
EFG48222.1
Hypothetical protein.
  
     0.431
hisS
histidine--tRNA ligase; COG: COG0124; Pfam: PF00587,PF03129; InterPro: IPR015805.
  
     0.423
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.