STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46834.1Transcriptional regulator, AraC family. (153 aa)    
Predicted Functional Partners:
EFG46833.1
GroES-like protein; COG: COG0604; Pfam: PF08240,PF00107; InterPro: IPR002085.
       0.737
EFG46832.1
Transporter, major facilitator family protein; COG: COG2814; Pfam: PF07690; InterPro: IPR011701.
       0.689
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.655
EFG46836.1
Transcriptional regulator, TetR family; COG: COG1309; Pfam: PF00440; InterPro: IPR001647.
  
     0.564
EFG46831.1
Hypothetical protein; COG: COG1396.
 
    0.553
EFG48121.1
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
     0.493
EFG46830.1
Hypothetical protein.
  
    0.430
EFG46816.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.