STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46883.1Putative ornithine cyclodeaminase; COG: COG2423; Pfam: PF02423; InterPro: IPR003462. (321 aa)    
Predicted Functional Partners:
EFG46497.1
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF01619,PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
  
 
 0.942
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.913
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.895
ald
Alanine dehydrogenase; COG: COG0686; Pfam: PF05222,PF01262; InterPro: IPR008141; Belongs to the AlaDH/PNT family.
    
  0.886
aspB2
Aminotransferase, class I/II; COG: COG0436; Pfam: PF00155; InterPro: IPR004839.
 
  
 0.790
EFG46882.1
Acetyltransferase, GNAT family; Pfam: PF00583; InterPro: IPR016181.
       0.773
EFG48365.1
Hypothetical protein; Overlaps another CDS with the same product name; 2.6.1.51.
    
  0.737
EFG48366.1
Hypothetical protein; COG: COG0075; InterPro: IPR015421; overlaps another CDS with the same product name; 2.6.1.45.
    
  0.737
aspC
Aminotransferase, class I/II; COG: COG0436; Pfam: PF00155; InterPro: IPR004839.
    
 0.735
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.721
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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