STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46806.1DNA-binding helix-turn-helix protein; Pfam: PF01381,PF06114; InterPro: IPR001387. (502 aa)    
Predicted Functional Partners:
aceA
Isocitrate lyase; COG: COG2224; Pfam: PF00463; InterPro: IPR015813.
 
   
 0.820
prpD
MmgE/PrpD family protein; COG: COG2079; Pfam: PF03972; InterPro: IPR005656.
  
  
 0.577
aceB2
Malate synthase; COG: COG2225; Pfam: PF01274; InterPro: IPR001465.
     
 0.489
sdhB
Succinate dehydrogenase iron-sulfur subunit; COG: COG0479; Pfam: PF00111; InterPro: IPR004489; overlaps another CDS with the same product name.
    
 0.475
EFG46807.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Pfam: PF00106; InterPro: IPR002198.
       0.468
EFG47773.1
Membrane protein.
  
     0.466
EFG48629.1
Hypothetical protein.
  
     0.445
pckA
Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
     
 0.435
EFG46808.1
TIGR03084 family protein.
       0.412
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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