STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppFABC transporter, ATP-binding protein; COG: COG4608; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily. (338 aa)    
Predicted Functional Partners:
appC2
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
 0.984
EFG46384.1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
 0.984
oppB
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 0.976
dppD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
0.972
appC
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
 0.969
dppC
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
 0.934
dppB3
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 0.899
appB
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 0.894
dppB2
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 0.892
EFG48173.1
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.861
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.