STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dfnCOxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040. (248 aa)    
Predicted Functional Partners:
EFG46729.1
Thioesterase domain protein; Pfam: PF00975; InterPro: IPR001031.
    
 0.846
EFG46734.1
AMP-binding enzyme; COG: COG0318; Pfam: PF00501; InterPro: IPR000873.
  
  0.803
EFG46730.1
Hypothetical protein.
  
   0.796
accD
Putative acetyl-CoA carboxylase, carboxyl transferase, beta subunit; COG: COG0777; Pfam: PF01039; InterPro: IPR000022.
 
 
 0.794
EFG46728.1
SnoaL-like polyketide cyclase; Pfam: PF07366; InterPro: IPR009959.
    
  0.782
EFG46731.1
Hypothetical protein; Similar to Pseudomonas avirulence D protein; Pfam: PF05655; InterPro: IPR008799.
       0.773
EFG46732.1
Hypothetical protein.
       0.773
fabF
Putative beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 0.765
fabD
Putative [acyl-carrier-protein] S-malonyltransferase; COG: COG0331; Pfam: PF00698; InterPro: IPR001227.
 
  0.761
hsdA
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF01370; InterPro: IPR016040.
  
     0.756
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.