STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46603.1ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR000515. (522 aa)    
Predicted Functional Partners:
EFG46602.1
ABC transporter, solute-binding protein; COG: COG1840; Pfam: PF01547; InterPro: IPR006059.
 
 
 0.996
EFG46604.1
ABC transporter, ATP-binding protein; COG: COG3842; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.994
cysA
ABC transporter, ATP-binding protein; COG: COG1118; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.873
EFG48315.1
Von Willebrand factor type A domain protein; Pfam: PF00092; InterPro: IPR002035.
  
 
 0.809
EFG48152.1
Hypothetical protein.
  
 
 0.502
EFG46530.1
Periplasmic binding protein; Pfam: PF01497; InterPro: IPR002491.
  
    0.462
EFG48146.1
TOBE domain protein; Pfam: PF00376,PF03459.
    
  0.446
EFG47144.1
ABC transporter, ATP-binding protein; COG: COG4559; Pfam: PF00005; InterPro: IPR003593.
  
  
 0.414
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.