STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46479.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
EFG46478.1
DNA-binding helix-turn-helix protein; COG: COG3655; Pfam: PF01381.
 
    0.979
EFG46480.1
Transposase; COG: COG3464; Pfam: PF01610; InterPro: IPR002560.
       0.504
EFG47314.1
TQXA domain protein; Similar to gram-positive cocci surface protein; Pfam: PF00746.
  
     0.477
EFG47820.1
Hypothetical protein.
  
     0.452
EFG47819.1
Hypothetical protein.
  
     0.440
EFG46481.1
Actinobacterial surface-anchored domain protein; COG: COG3464; Pfam: PF00746.
       0.435
EFG48315.1
Von Willebrand factor type A domain protein; Pfam: PF00092; InterPro: IPR002035.
  
     0.417
EFG46477.1
LPXTG-motif cell wall anchor domain protein; Pfam: PF05737,PF00746.
       0.406
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.