STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005010709annotation not available (156 aa)    
Predicted Functional Partners:
ENSMMDP00005008838
LIM-domain binding 1b.
    
 0.552
LOC115372411
LIM domain-binding protein 1-A-like.
    
 0.552
LOC115366895
LIM domain-binding protein 2.
    
 0.552
ENSMMDP00005000077
annotation not available
    
 0.524
SRF
Serum response factor.
    
 0.524
tpk1
Thiamin pyrophosphokinase 1.
    
  0.519
ENSMMDP00005033508
annotation not available
    
  0.501
ENSMMDP00005033512
annotation not available
    
  0.501
lhx4
LIM homeobox 4.
    
0.493
LHX3
LIM homeobox 3.
    
0.493
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.