A0C909_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0C909_PARTE

Ribosomal_S10 domain-containing protein. (122 aa)

Predicted Functional Partners:

A0BD97_PARTE

0.999

A0BII3_PARTE

0.999

IBLD0023

0.999

PTMB.431c

0.999

A0BBI0_PARTE

0.998

A0BEL6_PARTE

0.998

A0BF01_PARTE

0.998

A0BIC4_PARTE

0.998

A0BNY3_PARTE

0.998

A0BS60_PARTE

0.998

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BBI0_PARTE	A0BD97_PARTE	A0BBI0	A0BD97	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
A0BBI0_PARTE	A0BEL6_PARTE	A0BBI0	A0BEL6	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S27.	0.998
A0BBI0_PARTE	A0BF01_PARTE	A0BBI0	A0BF01	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.997
A0BBI0_PARTE	A0BIC4_PARTE	A0BBI0	A0BIC4	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_L16 domain-containing protein.	0.997
A0BBI0_PARTE	A0BII3_PARTE	A0BBI0	A0BII3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
A0BBI0_PARTE	A0BNY3_PARTE	A0BBI0	A0BNY3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.998
A0BBI0_PARTE	A0BS60_PARTE	A0BBI0	A0BS60	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S27.	0.998
A0BBI0_PARTE	A0C909_PARTE	A0BBI0	A0C909	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_S10 domain-containing protein.	0.998
A0BBI0_PARTE	IBLD0023	A0BBI0	Q3SEA6	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein L4, putative.	0.999
A0BBI0_PARTE	PTMB.431c	A0BBI0	Q6BFE0	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	40s ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family.	0.999
A0BD97_PARTE	A0BBI0_PARTE	A0BD97	A0BBI0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
A0BD97_PARTE	A0BIC4_PARTE	A0BD97	A0BIC4	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.999
A0BD97_PARTE	A0BNY3_PARTE	A0BD97	A0BNY3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.998
A0BD97_PARTE	A0C909_PARTE	A0BD97	A0C909	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.999
A0BD97_PARTE	IBLD0023	A0BD97	Q3SEA6	Uncharacterized protein.	Ribosomal protein L4, putative.	0.989
A0BD97_PARTE	PTMB.431c	A0BD97	Q6BFE0	Uncharacterized protein.	40s ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family.	0.999
A0BEL6_PARTE	A0BBI0_PARTE	A0BEL6	A0BBI0	40S ribosomal protein S27.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.998
A0BEL6_PARTE	A0BF01_PARTE	A0BEL6	A0BF01	40S ribosomal protein S27.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.998
A0BEL6_PARTE	A0BIC4_PARTE	A0BEL6	A0BIC4	40S ribosomal protein S27.	Ribosomal_L16 domain-containing protein.	0.999
A0BEL6_PARTE	A0BII3_PARTE	A0BEL6	A0BII3	40S ribosomal protein S27.	Uncharacterized protein.	0.999