A0CMN7_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0CMN7_PARTE

Uncharacterized protein. (1312 aa)

Predicted Functional Partners:

KATNAL2

0.743

KATNAL2-2

0.743

A0CA67_PARTE

0.673

A0E5N7_PARTE

0.617

A0BPT3_PARTE

0.589

A0BLR8_PARTE

0.581

A0BW96_PARTE

0.560

A0C7Q6_PARTE

0.560

A0DVN2_PARTE

0.560

A0E0B8_PARTE

0.560

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BLR8_PARTE	A0BPT3_PARTE	A0BLR8	A0BPT3	AKAP7_NLS domain-containing protein.	Tr-type G domain-containing protein.	0.903
A0BLR8_PARTE	A0CMN7_PARTE	A0BLR8	A0CMN7	AKAP7_NLS domain-containing protein.	Uncharacterized protein.	0.581
A0BLR8_PARTE	A0E5N7_PARTE	A0BLR8	A0E5N7	AKAP7_NLS domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.901
A0BPT3_PARTE	A0BLR8_PARTE	A0BPT3	A0BLR8	Tr-type G domain-containing protein.	AKAP7_NLS domain-containing protein.	0.903
A0BPT3_PARTE	A0CMN7_PARTE	A0BPT3	A0CMN7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.589
A0BPT3_PARTE	A0E5N7_PARTE	A0BPT3	A0E5N7	Tr-type G domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.901
A0BW96_PARTE	A0CMN7_PARTE	A0BW96	A0CMN7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.560
A0BW96_PARTE	KATNAL2	A0BW96	A0D0B7	Uncharacterized protein; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.591
A0BW96_PARTE	KATNAL2-2	A0BW96	A0DC17	Uncharacterized protein; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.595
A0C7Q6_PARTE	A0CMN7_PARTE	A0C7Q6	A0CMN7	AAA domain-containing protein.	Uncharacterized protein.	0.560
A0C7Q6_PARTE	KATNAL2	A0C7Q6	A0D0B7	AAA domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.577
A0C7Q6_PARTE	KATNAL2-2	A0C7Q6	A0DC17	AAA domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.575
A0CA67_PARTE	A0CMN7_PARTE	A0CA67	A0CMN7	Uncharacterized protein.	Uncharacterized protein.	0.673
A0CMN7_PARTE	A0BLR8_PARTE	A0CMN7	A0BLR8	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.581
A0CMN7_PARTE	A0BPT3_PARTE	A0CMN7	A0BPT3	Uncharacterized protein.	Tr-type G domain-containing protein.	0.589
A0CMN7_PARTE	A0BW96_PARTE	A0CMN7	A0BW96	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.560
A0CMN7_PARTE	A0C7Q6_PARTE	A0CMN7	A0C7Q6	Uncharacterized protein.	AAA domain-containing protein.	0.560
A0CMN7_PARTE	A0CA67_PARTE	A0CMN7	A0CA67	Uncharacterized protein.	Uncharacterized protein.	0.673
A0CMN7_PARTE	A0DVN2_PARTE	A0CMN7	A0DVN2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.560
A0CMN7_PARTE	A0E0B8_PARTE	A0CMN7	A0E0B8	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.560