A0CQ13_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0CQ13_PARTE

Lipase; Belongs to the AB hydrolase superfamily. Lipase family. (379 aa)

Predicted Functional Partners:

A0BRK2_PARTE

0.742

A0BUU7_PARTE

0.742

A0C2J6_PARTE

0.742

A0C8X9_PARTE

0.742

A0D121_PARTE

0.742

A0E893_PARTE

0.742

A0BX97_PARTE

0.718

A0CKD4_PARTE

0.703

A0EBR0_PARTE

0.700

A0CP72_PARTE

0.691

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BRK2_PARTE	A0BX97_PARTE	A0BRK2	A0BX97	Carrier domain-containing protein.	Uncharacterized protein.	0.429
A0BRK2_PARTE	A0C2J6_PARTE	A0BRK2	A0C2J6	Carrier domain-containing protein.	Carrier domain-containing protein.	0.900
A0BRK2_PARTE	A0C8X9_PARTE	A0BRK2	A0C8X9	Carrier domain-containing protein.	Carrier domain-containing protein.	0.989
A0BRK2_PARTE	A0CP72_PARTE	A0BRK2	A0CP72	Carrier domain-containing protein.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.538
A0BRK2_PARTE	A0CQ13_PARTE	A0BRK2	A0CQ13	Carrier domain-containing protein.	Lipase; Belongs to the AB hydrolase superfamily. Lipase family.	0.742
A0BRK2_PARTE	A0D121_PARTE	A0BRK2	A0D121	Carrier domain-containing protein.	Carrier domain-containing protein.	0.989
A0BRK2_PARTE	A0E893_PARTE	A0BRK2	A0E893	Carrier domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.900
A0BRK2_PARTE	A0EBR0_PARTE	A0BRK2	A0EBR0	Carrier domain-containing protein.	Uncharacterized protein.	0.516
A0BUU7_PARTE	A0BX97_PARTE	A0BUU7	A0BX97	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.429
A0BUU7_PARTE	A0CP72_PARTE	A0BUU7	A0CP72	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.538
A0BUU7_PARTE	A0CQ13_PARTE	A0BUU7	A0CQ13	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Lipase; Belongs to the AB hydrolase superfamily. Lipase family.	0.742
A0BUU7_PARTE	A0EBR0_PARTE	A0BUU7	A0EBR0	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.516
A0BX97_PARTE	A0BRK2_PARTE	A0BX97	A0BRK2	Uncharacterized protein.	Carrier domain-containing protein.	0.429
A0BX97_PARTE	A0BUU7_PARTE	A0BX97	A0BUU7	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.429
A0BX97_PARTE	A0C2J6_PARTE	A0BX97	A0C2J6	Uncharacterized protein.	Carrier domain-containing protein.	0.429
A0BX97_PARTE	A0C8X9_PARTE	A0BX97	A0C8X9	Uncharacterized protein.	Carrier domain-containing protein.	0.429
A0BX97_PARTE	A0CQ13_PARTE	A0BX97	A0CQ13	Uncharacterized protein.	Lipase; Belongs to the AB hydrolase superfamily. Lipase family.	0.718
A0BX97_PARTE	A0D121_PARTE	A0BX97	A0D121	Uncharacterized protein.	Carrier domain-containing protein.	0.429
A0BX97_PARTE	A0E893_PARTE	A0BX97	A0E893	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.429
A0BX97_PARTE	A0EBR0_PARTE	A0BX97	A0EBR0	Uncharacterized protein.	Uncharacterized protein.	0.806