A0D9S1_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0D9S1_PARTE

Uncharacterized protein. (1508 aa)

Predicted Functional Partners:

A0E5E2_PARTE

0.763

A0DQU7_PARTE

0.760

A0DFX5_PARTE

0.753

A0BVK9_PARTE

0.746

alp1-1

0.746

A0CFC7_PARTE

0.738

A0CLZ3_PARTE

0.738

A0C187_PARTE

0.731

A0CCH7_PARTE

0.731

A0DMC9_PARTE

0.726

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BVK9_PARTE	A0D9S1_PARTE	A0BVK9	A0D9S1	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.746
A0BVK9_PARTE	A0E5E2_PARTE	A0BVK9	A0E5E2	Uncharacterized protein; Belongs to the actin family.	YL1_C domain-containing protein.	0.999
A0BVK9_PARTE	alp1-1	A0BVK9	Q3M0X1	Uncharacterized protein; Belongs to the actin family.	Actin-like protein 1-1; Belongs to the actin family.	0.546
A0C187_PARTE	A0CCH7_PARTE	A0C187	A0CCH7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
A0C187_PARTE	A0CFC7_PARTE	A0C187	A0CFC7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.537
A0C187_PARTE	A0CLZ3_PARTE	A0C187	A0CLZ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.537
A0C187_PARTE	A0D9S1_PARTE	A0C187	A0D9S1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.731
A0C187_PARTE	A0DFX5_PARTE	A0C187	A0DFX5	Uncharacterized protein; Belongs to the DEAD box helicase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.559
A0C187_PARTE	A0DQU7_PARTE	A0C187	A0DQU7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.775
A0CCH7_PARTE	A0C187_PARTE	A0CCH7	A0C187	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
A0CCH7_PARTE	A0CFC7_PARTE	A0CCH7	A0CFC7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.537
A0CCH7_PARTE	A0CLZ3_PARTE	A0CCH7	A0CLZ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.537
A0CCH7_PARTE	A0D9S1_PARTE	A0CCH7	A0D9S1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.731
A0CCH7_PARTE	A0DFX5_PARTE	A0CCH7	A0DFX5	Uncharacterized protein; Belongs to the DEAD box helicase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.559
A0CCH7_PARTE	A0DQU7_PARTE	A0CCH7	A0DQU7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.775
A0CFC7_PARTE	A0C187_PARTE	A0CFC7	A0C187	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.537
A0CFC7_PARTE	A0CCH7_PARTE	A0CFC7	A0CCH7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.537
A0CFC7_PARTE	A0CLZ3_PARTE	A0CFC7	A0CLZ3	Uncharacterized protein.	Uncharacterized protein.	0.901
A0CFC7_PARTE	A0D9S1_PARTE	A0CFC7	A0D9S1	Uncharacterized protein.	Uncharacterized protein.	0.738
A0CFC7_PARTE	A0DFX5_PARTE	A0CFC7	A0DFX5	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999