A0DYV4_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0DYV4_PARTE

Uncharacterized protein. (477 aa)

Predicted Functional Partners:

A0EA16_PARTE

0.999

A0CAS9_PARTE

0.997

A0BEE5_PARTE

0.863

A0EHT1_PARTE

0.853

A0CXN6_PARTE

0.832

syb6-1

0.832

syb7-1

0.832

syb7-2

0.832

A0BZ74_PARTE

0.800

A0EGQ7_PARTE

0.800

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BEE5_PARTE	A0BZ74_PARTE	A0BEE5	A0BZ74	Uncharacterized protein.	Uncharacterized protein.	0.653
A0BEE5_PARTE	A0CAS9_PARTE	A0BEE5	A0CAS9	Uncharacterized protein.	Uncharacterized protein.	0.947
A0BEE5_PARTE	A0DYV4_PARTE	A0BEE5	A0DYV4	Uncharacterized protein.	Uncharacterized protein.	0.863
A0BEE5_PARTE	A0EA16_PARTE	A0BEE5	A0EA16	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.944
A0BEE5_PARTE	A0EGQ7_PARTE	A0BEE5	A0EGQ7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.653
A0BEE5_PARTE	A0EHT1_PARTE	A0BEE5	A0EHT1	Uncharacterized protein.	Uncharacterized protein.	0.649
A0BZ74_PARTE	A0BEE5_PARTE	A0BZ74	A0BEE5	Uncharacterized protein.	Uncharacterized protein.	0.653
A0BZ74_PARTE	A0CAS9_PARTE	A0BZ74	A0CAS9	Uncharacterized protein.	Uncharacterized protein.	0.782
A0BZ74_PARTE	A0DYV4_PARTE	A0BZ74	A0DYV4	Uncharacterized protein.	Uncharacterized protein.	0.800
A0BZ74_PARTE	A0EA16_PARTE	A0BZ74	A0EA16	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.852
A0CAS9_PARTE	A0BEE5_PARTE	A0CAS9	A0BEE5	Uncharacterized protein.	Uncharacterized protein.	0.947
A0CAS9_PARTE	A0BZ74_PARTE	A0CAS9	A0BZ74	Uncharacterized protein.	Uncharacterized protein.	0.782
A0CAS9_PARTE	A0DYV4_PARTE	A0CAS9	A0DYV4	Uncharacterized protein.	Uncharacterized protein.	0.997
A0CAS9_PARTE	A0EA16_PARTE	A0CAS9	A0EA16	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.996
A0CAS9_PARTE	A0EGQ7_PARTE	A0CAS9	A0EGQ7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.782
A0CAS9_PARTE	A0EHT1_PARTE	A0CAS9	A0EHT1	Uncharacterized protein.	Uncharacterized protein.	0.971
A0CXN6_PARTE	A0DYV4_PARTE	A0CXN6	A0DYV4	Uncharacterized protein.	Uncharacterized protein.	0.832
A0CXN6_PARTE	A0EA16_PARTE	A0CXN6	A0EA16	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.908
A0DYV4_PARTE	A0BEE5_PARTE	A0DYV4	A0BEE5	Uncharacterized protein.	Uncharacterized protein.	0.863
A0DYV4_PARTE	A0BZ74_PARTE	A0DYV4	A0BZ74	Uncharacterized protein.	Uncharacterized protein.	0.800