STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADH85379.1Cytochrome-c3 hydrogenase; KEGG: nam:NAMH_1007 periplasmic [NiFeSe] hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit. (522 aa)    
Predicted Functional Partners:
ADH85378.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: nam:NAMH_1008 hydrogenase; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.983
ADH85600.1
KEGG: wsu:WS1685 Ni/Fe-hydrogenase cytochrome b; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561.
 
 
 0.953
ADH85225.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dps:DP0160 periplasmic [NiFeSe] hydrogenase, small subunit [precursor]; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.932
ADH85598.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: tdn:Suden_1436 Ni-Fe hydrogenase, small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Twin-arginine translocation pathway, signal sequence, subgroup.
 
 
 0.932
ADH86164.1
PFAM: methyl-viologen-reducing hydrogenase delta subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1107 fusion protein of heterodisulfide reductase, subunit A (HdrA) and hydrogenase, delta subunit (HydD).
  
 
 0.916
ADH85610.1
KEGG: dps:DP2886 pyruvate-flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding.
   
  
 0.905
ADH85601.1
Hydrogenase maturation protease; KEGG: wsu:WS1684 hydrogenase expression/formation protein; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.
 
 
 0.844
ADH85375.1
KEGG: mag:amb2638 FOG: CheY-like receiver; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.773
ADH85376.1
PFAM: CheC domain protein; KEGG: dma:DMR_28690 hypothetical protein.
       0.773
ADH85377.1
CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dma:DMR_28700 putative sensor histidine kinase; SMART: ATP-binding region ATPase domain protein.
       0.773
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
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