STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADH87032.1PFAM: glycoside hydrolase family 3 domain protein; KEGG: sfu:Sfum_2523 beta-N-acetylhexosaminidase. (331 aa)    
Predicted Functional Partners:
ADH85681.1
PFAM: conserved hypothetical protein; KEGG: dps:DP2946 hypothetical protein.
  
 0.978
ADH86780.1
PFAM: beta-lactamase; KEGG: dat:HRM2_35280 putative beta-lactamase class C protein.
  
 0.974
ADH85560.1
PFAM: aminoglycoside phosphotransferase; KEGG: dps:DP2940 hypothetical protein.
 
  
 0.924
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.775
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
 0.743
ADH85013.1
KEGG: dal:Dalk_3806 peptidase U61 LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A.
   
 0.677
ADH87030.1
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gsu:GSU3158 cysteine synthase B.
       0.526
ADH85721.1
PFAM: glycoside hydrolase family 5; KEGG: chu:CHU_1842 retaining beta-glycosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.512
ADH85802.1
PFAM: beta-lactamase; KEGG: eca:ECA0077 hypothetical protein.
 
  
 0.492
ADH84974.1
Lytic transglycosylase catalytic; KEGG: dps:DP2874 hypothetical protein; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
     
 0.484
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
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