STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eKEGG: afu:AF1430 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (50 aa)    
Predicted Functional Partners:
rpl18a
PFAM: Ribosomal LX protein; KEGG: afu:AF2064 50S ribosomal protein LX.
   
 0.999
rpl31e
PFAM: Ribosomal protein L31e; KEGG: afu:AF2066 50S ribosomal protein L31E (rpl31E); Belongs to the ribosomal protein L31e family.
  
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.999
rpl1
Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.
  
 0.999
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 0.999
rpl21e
PFAM: Ribosomal protein L21e; KEGG: afu:AF1529 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
   
 0.999
rpl15e
PFAM: Ribosomal protein L15e; KEGG: afu:AF2319 50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 0.999
rpl37ae
Ribosomal protein L37a; Binds to the 23S rRNA.
  
 
 0.999
rps6e
PFAM: Ribosomal protein S6e; KEGG: afu:AF0511 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.999
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
 
 0.999
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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