STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACZ77508.1PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; type IV secretory pathway VirB3 family protein; KEGG: cko:CKO_00896 hypothetical protein. (914 aa)    
Predicted Functional Partners:
ACZ77513.1
PFAM: VirB8 family protein; KEGG: ypm:YP_pCRY13 type IV secretion system VirB8 component.
 
 
 0.974
ACZ77514.1
TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: cko:CKO_00890 hypothetical protein.
 
  
 0.958
ACZ77515.1
PFAM: conjugation TrbI family protein; KEGG: ecq:ECED1_2269 putative type IV secretory pathway VirB10 component.
 
  
 0.955
ACZ77506.1
PFAM: Lytic transglycosylase catalytic; KEGG: cko:CKO_00898 hypothetical protein.
 
   
 0.952
ACZ76323.1
PFAM: VirB8 family protein; KEGG: dze:Dd1591_1482 VirB8 family protein.
 
 
 0.951
ACZ76321.1
PFAM: conjugation TrbI family protein; KEGG: dze:Dd1591_1480 conjugation TrbI family protein.
 
  
 0.922
ACZ76322.1
TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: dze:Dd1591_1481 P-type conjugative transfer protein VirB9.
 
  
 0.922
ACZ77507.1
PFAM: Conjugal transfer protein TrbC; KEGG: cko:CKO_00897 hypothetical protein.
  
  
 0.921
ACZ76327.1
PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; type IV secretory pathway VirB3 family protein; KEGG: dze:Dd1591_1487 CagE TrbE VirB component of type IV transporter system.
  
  
 
0.903
ACZ77511.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: ypm:YP_pCRY12 type IV secretory pathway VirB6 component.
  
  
 0.888
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.